{ "schema_version": "2.0", "record_type": "dataset", "tier": "verified", "slug": "gtex", "name": "GTEx", "summary": { "en": "License: unstated (NOASSERTION); Mdexa hosting: pending. the official terms say the data are free to use but not whether commercial use or redistribution is allowed: unstated, terms present (Article 24) Risk flag(s): real-patient-text.", "zh": "许可证声明：未声明（NOASSERTION）；本站处理：待确认，暂只链接原出处。官方条款说可免费使用，但未说明能否商用或再分发：未声明，条款在场（第 24 条）。来源风险标记：real-patient-text。" }, "systems": [ "modern-medicine" ], "domains": [ "genomics-omics" ], "content_types": [ "database" ], "content_description": { "en": "Adult GTEx is a public resource for studying tissue-specific gene expression and regulation, with samples from 54 non-diseased tissue sites across nearly 1000 individuals.", "zh": "成人GTEx项目是研究组织特异性基因表达与调控的公共资源，样本取自54个非患病组织部位、近1000名个体。" }, "languages": [ "en" ], "modalities": [ "tabular" ], "size": { "raw": "nearly 1000 individuals", "measures": [] }, "publisher": "GTEx Project", "year": { "value": null, "raw": null }, "license": { "legacy_status": "pending", "spdx": "NOASSERTION", "commercial_use": "unstated", "derivatives": "unstated", "redistribution": "conditional", "rationale": { "en": "the official terms say the data are free to use but not whether commercial use or redistribution is allowed: unstated, terms present (Article 24)", "zh": "官方条款说可免费使用，但未说明能否商用或再分发：未声明，条款在场（第 24 条）" }, "evidence": [ { "location": "dataset-page", "location_detail": { "en": "Statement found in snapshot s09 (page)", "zh": "在快照 s09（page）中找到的声明" }, "excerpt": "All data files generated in the GTEx project are available for download.", "url": "https://gtexportal.org/home/downloads/adult-gtex/overview", "verified_on": "2026-11-13", "snapshot_id": "s09", "observed": "page", "captured_by": "browser-agent", "capturer": "browser-agent", "captured_at": "2026-11-14", "page_title": "Download Open Access Datasets - GTEx Portal", "final_url": "https://gtexportal.org/home/downloads/adult-gtex/overview", "text_sha256": "bcb28f3d7dc7e8ff72144049494a1640f3d0e5cbd70ece1e2d5258be260d6f2d" }, { "location": "dataset-page", "location_detail": { "en": "Statement found in snapshot s09 (page)", "zh": "在快照 s09（page）中找到的声明" }, "excerpt": "All raw sequence data files (DNA and RNA), and the full donor metadata files, are protected access data.", "url": "https://gtexportal.org/home/downloads/adult-gtex/overview", "verified_on": "2026-11-13", "snapshot_id": "s09", "observed": "page", "captured_by": "browser-agent", "capturer": "browser-agent", "captured_at": "2026-11-14", "page_title": "Download Open Access Datasets - GTEx Portal", "final_url": "https://gtexportal.org/home/downloads/adult-gtex/overview", "text_sha256": "bcb28f3d7dc7e8ff72144049494a1640f3d0e5cbd70ece1e2d5258be260d6f2d" }, { "location": "dataset-page", "location_detail": { "en": "Statement found in snapshot s09 (page)", "zh": "在快照 s09（page）中找到的声明" }, "excerpt": "Users interested in accessing protected data must apply for access separately and can learn how to do so by visiting our protected data access page.", "url": "https://gtexportal.org/home/downloads/adult-gtex/overview", "verified_on": "2026-11-13", "snapshot_id": "s09", "observed": "page", "captured_by": "browser-agent", "capturer": "browser-agent", "captured_at": "2026-11-14", "page_title": "Download Open Access Datasets - GTEx Portal", "final_url": "https://gtexportal.org/home/downloads/adult-gtex/overview", "text_sha256": "bcb28f3d7dc7e8ff72144049494a1640f3d0e5cbd70ece1e2d5258be260d6f2d" }, { "location": "dataset-page", "location_detail": { "en": "Statement found in snapshot s09 (page)", "zh": "在快照 s09（page）中找到的声明" }, "excerpt": "GTEx data, visualizations, and tools can all be used with acknowledgement.", "url": "https://gtexportal.org/home/downloads/adult-gtex/overview", "verified_on": "2026-11-13", "snapshot_id": "s09", "observed": "page", "captured_by": "browser-agent", "capturer": "browser-agent", "captured_at": "2026-11-14", "page_title": "Download Open Access Datasets - GTEx Portal", "final_url": "https://gtexportal.org/home/downloads/adult-gtex/overview", "text_sha256": "bcb28f3d7dc7e8ff72144049494a1640f3d0e5cbd70ece1e2d5258be260d6f2d" }, { "location": "dataset-page", "location_detail": { "en": "Statement found in snapshot s10 (page)", "zh": "在快照 s10（page）中找到的声明" }, "excerpt": "Due to the nature of our donor consent agreement, raw data and attributes which might be used to identify the donors are not publicly available on the GTEx Portal.", "url": "https://gtexportal.org/home/protectedDataAccess", "verified_on": "2026-11-13", "snapshot_id": "s10", "observed": "page", "captured_by": "browser-agent", "capturer": "browser-agent", "captured_at": "2026-11-14", "page_title": "GTEx Protected Access Data", "final_url": "https://gtexportal.org/home/protectedDataAccess", "text_sha256": "8b54c70e176c10a07396a13d15ec296e098a30527cf9f75b2177725f0c6505ce" }, { "location": "dataset-page", "location_detail": { "en": "Statement found in snapshot s10 (page)", "zh": "在快照 s10（page）中找到的声明" }, "excerpt": "Access to GTEx protected access data requires an approved dbGaP application.", "url": "https://gtexportal.org/home/protectedDataAccess", "verified_on": "2026-11-13", "snapshot_id": "s10", "observed": "page", "captured_by": "browser-agent", "capturer": "browser-agent", "captured_at": "2026-11-14", "page_title": "GTEx Protected Access Data", "final_url": "https://gtexportal.org/home/protectedDataAccess", "text_sha256": "8b54c70e176c10a07396a13d15ec296e098a30527cf9f75b2177725f0c6505ce" }, { "location": "dataset-page", "location_detail": { "en": "Statement found in snapshot s10 (page)", "zh": "在快照 s10（page）中找到的声明" }, "excerpt": "GTEx V8, V9, and V10 protected access data are now hosted in the AnVIL repository, with access granted to users who have approved dbGaP applications.", "url": "https://gtexportal.org/home/protectedDataAccess", "verified_on": "2026-11-13", "snapshot_id": "s10", "observed": "page", "captured_by": "browser-agent", "capturer": "browser-agent", "captured_at": "2026-11-14", "page_title": "GTEx Protected Access Data", "final_url": "https://gtexportal.org/home/protectedDataAccess", "text_sha256": "8b54c70e176c10a07396a13d15ec296e098a30527cf9f75b2177725f0c6505ce" }, { "location": "dataset-page", "location_detail": { "en": "Statement found in snapshot s10 (page)", "zh": "在快照 s10（page）中找到的声明" }, "excerpt": "You must have access to GTEx protected access data on dbGaP.", "url": "https://gtexportal.org/home/protectedDataAccess", "verified_on": "2026-11-13", "snapshot_id": "s10", "observed": "page", "captured_by": "browser-agent", "capturer": "browser-agent", "captured_at": "2026-11-14", "page_title": "GTEx Protected Access Data", "final_url": "https://gtexportal.org/home/protectedDataAccess", "text_sha256": "8b54c70e176c10a07396a13d15ec296e098a30527cf9f75b2177725f0c6505ce" }, { "location": "dataset-page", "location_detail": { "en": "Statement found in snapshot s10 (page)", "zh": "在快照 s10（page）中找到的声明" }, "excerpt": "Please note that downloading GTEx protected access data from Terra will incur egress fees from Google.", "url": "https://gtexportal.org/home/protectedDataAccess", "verified_on": "2026-11-13", "snapshot_id": "s10", "observed": "page", "captured_by": "browser-agent", "capturer": "browser-agent", "captured_at": "2026-11-14", "page_title": "GTEx Protected Access Data", "final_url": "https://gtexportal.org/home/protectedDataAccess", "text_sha256": "8b54c70e176c10a07396a13d15ec296e098a30527cf9f75b2177725f0c6505ce" }, { "location": "terms-page", "location_detail": { "en": "Statement found in snapshot s05 (terms-page)", "zh": "在快照 s05（terms-page）中找到的声明" }, "excerpt": "The GTEx Portal data is made available under the following license:", "url": "https://gtexportal.org/home/license", "verified_on": "2026-11-13", "snapshot_id": "s05", "observed": "page", "captured_by": "browser-agent", "capturer": "browser-agent", "captured_at": "2026-11-14", "page_title": "GTEx Portal Data License", "final_url": "https://gtexportal.org/home/license", "text_sha256": "52c789626c6ae62fde276cb2a1d25aae6be401415924f6763a00dfbc8cbbee51" }, { "location": "terms-page", "location_detail": { "en": "Statement found in snapshot s05 (terms-page)", "zh": "在快照 s05（terms-page）中找到的声明" }, "excerpt": "Downloading data from the GTEx Portal servers indicates your acceptance of the following Terms and Conditions: No charges, usage fees or royalties are paid to the GTEx Portal for this data.", "url": "https://gtexportal.org/home/license", "verified_on": "2026-11-13", "snapshot_id": "s05", "observed": "page", "captured_by": "browser-agent", "capturer": "browser-agent", "captured_at": "2026-11-14", "page_title": "GTEx Portal Data License", "final_url": "https://gtexportal.org/home/license", "text_sha256": "52c789626c6ae62fde276cb2a1d25aae6be401415924f6763a00dfbc8cbbee51" }, { "location": "terms-page", "location_detail": { "en": "Statement found in snapshot s05 (terms-page)", "zh": "在快照 s05（terms-page）中找到的声明" }, "excerpt": "acknowledge the GTEx Portal as the source of the data by including the phrase", "url": "https://gtexportal.org/home/license", "verified_on": "2026-11-13", "snapshot_id": "s05", "observed": "page", "captured_by": "browser-agent", "capturer": "browser-agent", "captured_at": "2026-11-14", "page_title": "GTEx Portal Data License", "final_url": "https://gtexportal.org/home/license", "text_sha256": "52c789626c6ae62fde276cb2a1d25aae6be401415924f6763a00dfbc8cbbee51" }, { "location": "terms-page", "location_detail": { "en": "Statement found in snapshot s05 (terms-page)", "zh": "在快照 s05（terms-page）中找到的声明" }, "excerpt": "not indicate or imply that the GTEx Portal has endorsed its products/services/applications.", "url": "https://gtexportal.org/home/license", "verified_on": "2026-11-13", "snapshot_id": "s05", "observed": "page", "captured_by": "browser-agent", "capturer": "browser-agent", "captured_at": "2026-11-14", "page_title": "GTEx Portal Data License", "final_url": "https://gtexportal.org/home/license", "text_sha256": "52c789626c6ae62fde276cb2a1d25aae6be401415924f6763a00dfbc8cbbee51" }, { "location": "terms-page", "location_detail": { "en": "Statement found in snapshot s05 (terms-page)", "zh": "在快照 s05（terms-page）中找到的声明" }, "excerpt": "Users who republish or redistribute the data (services, products or raw data) agree to:", "url": "https://gtexportal.org/home/license", "verified_on": "2026-11-13", "snapshot_id": "s05", "observed": "page", "captured_by": "browser-agent", "capturer": "browser-agent", "captured_at": "2026-11-14", "page_title": "GTEx Portal Data License", "final_url": "https://gtexportal.org/home/license", "text_sha256": "52c789626c6ae62fde276cb2a1d25aae6be401415924f6763a00dfbc8cbbee51" }, { "location": "terms-page", "location_detail": { "en": "Statement found in snapshot s05 (terms-page)", "zh": "在快照 s05（terms-page）中找到的声明" }, "excerpt": "maintain the most current version of all distributed data, or", "url": "https://gtexportal.org/home/license", "verified_on": "2026-11-13", "snapshot_id": "s05", "observed": "page", "captured_by": "browser-agent", "capturer": "browser-agent", "captured_at": "2026-11-14", "page_title": "GTEx Portal Data License", "final_url": "https://gtexportal.org/home/license", "text_sha256": "52c789626c6ae62fde276cb2a1d25aae6be401415924f6763a00dfbc8cbbee51" }, { "location": "terms-page", "location_detail": { "en": "Statement found in snapshot s05 (terms-page)", "zh": "在快照 s05（terms-page）中找到的声明" }, "excerpt": "make known in a clear and conspicuous manner that the products/services/applications do not reflect the most current/accurate data available from the GTEx Portal.", "url": "https://gtexportal.org/home/license", "verified_on": "2026-11-13", "snapshot_id": "s05", "observed": "page", "captured_by": "browser-agent", "capturer": "browser-agent", "captured_at": "2026-11-14", "page_title": "GTEx Portal Data License", "final_url": "https://gtexportal.org/home/license", "text_sha256": "52c789626c6ae62fde276cb2a1d25aae6be401415924f6763a00dfbc8cbbee51" }, { "location": "terms-page", "location_detail": { "en": "Statement found in snapshot s05 (terms-page)", "zh": "在快照 s05（terms-page）中找到的声明" }, "excerpt": "These data are produced with a reasonable standard of care, but the GTEx Project makes no warranties express or implied, including no warranty of merchantability or fitness for particular purpose, regarding the accuracy or completeness of the data.", "url": "https://gtexportal.org/home/license", "verified_on": "2026-11-13", "snapshot_id": "s05", "observed": "page", "captured_by": "browser-agent", "capturer": "browser-agent", "captured_at": "2026-11-14", "page_title": "GTEx Portal Data License", "final_url": "https://gtexportal.org/home/license", "text_sha256": "52c789626c6ae62fde276cb2a1d25aae6be401415924f6763a00dfbc8cbbee51" }, { "location": "terms-page", "location_detail": { "en": "Statement found in snapshot s05 (terms-page)", "zh": "在快照 s05（terms-page）中找到的声明" }, "excerpt": "Users agree to hold the GTEx Project and the Broad Institute and the U.S. Government harmless from any liability resulting from errors in the data.", "url": "https://gtexportal.org/home/license", "verified_on": "2026-11-13", "snapshot_id": "s05", "observed": "page", "captured_by": "browser-agent", "capturer": "browser-agent", "captured_at": "2026-11-14", "page_title": "GTEx Portal Data License", "final_url": "https://gtexportal.org/home/license", "text_sha256": "52c789626c6ae62fde276cb2a1d25aae6be401415924f6763a00dfbc8cbbee51" }, { "location": "terms-page", "location_detail": { "en": "Statement found in snapshot s05 (terms-page)", "zh": "在快照 s05（terms-page）中找到的声明" }, "excerpt": "The GTEx Project disclaims any liability for any consequences due to use, misuse, or interpretation of information contained or not contained in the data.", "url": "https://gtexportal.org/home/license", "verified_on": "2026-11-13", "snapshot_id": "s05", "observed": "page", "captured_by": "browser-agent", "capturer": "browser-agent", "captured_at": "2026-11-14", "page_title": "GTEx Portal Data License", "final_url": "https://gtexportal.org/home/license", "text_sha256": "52c789626c6ae62fde276cb2a1d25aae6be401415924f6763a00dfbc8cbbee51" }, { "location": "terms-page", "location_detail": { "en": "Statement found in snapshot s05 (terms-page)", "zh": "在快照 s05（terms-page）中找到的声明" }, "excerpt": "The GTEx Project does not provide legal advice regarding copyright, fair use, or other aspects of intellectual property rights.", "url": "https://gtexportal.org/home/license", "verified_on": "2026-11-13", "snapshot_id": "s05", "observed": "page", "captured_by": "browser-agent", "capturer": "browser-agent", "captured_at": "2026-11-14", "page_title": "GTEx Portal Data License", "final_url": "https://gtexportal.org/home/license", "text_sha256": "52c789626c6ae62fde276cb2a1d25aae6be401415924f6763a00dfbc8cbbee51" }, { "location": "terms-page", "location_detail": { "en": "Statement found in snapshot s05 (terms-page)", "zh": "在快照 s05（terms-page）中找到的声明" }, "excerpt": "The GTEx Project reserves the right to change the type and format of its machine-readable data.", "url": "https://gtexportal.org/home/license", "verified_on": "2026-11-13", "snapshot_id": "s05", "observed": "page", "captured_by": "browser-agent", "capturer": "browser-agent", "captured_at": "2026-11-14", "page_title": "GTEx Portal Data License", "final_url": "https://gtexportal.org/home/license", "text_sha256": "52c789626c6ae62fde276cb2a1d25aae6be401415924f6763a00dfbc8cbbee51" } ], "license_conditions": [ "attribution", "notice-required", "keep-current", "no-endorsement" ], "custom_license": true, "terms_present": true, "review": { "method": "rules-plus-second-pass-model", "method_label": { "en": "Judged by public rules and checked a second time before listing.", "zh": "按公开规则判定，经二次核对后收录。" }, "readings": [ { "restatement": { "en": "the official terms say the data are free to use but not whether commercial use or redistribution is allowed: unstated, terms present (Article 24)", "zh": "官方条款说可免费使用，但未说明能否商用或再分发：未声明，条款在场（第 24 条）" }, "quotes": [ { "excerpt": "All data files generated in the GTEx project are available for download.", "snapshot_id": "s09", "url": "https://gtexportal.org/home/downloads/adult-gtex/overview" }, { "excerpt": "All raw sequence data files (DNA and RNA), and the full donor metadata files, are protected access data.", "snapshot_id": "s09", "url": "https://gtexportal.org/home/downloads/adult-gtex/overview" }, { "excerpt": "Users interested in accessing protected data must apply for access separately and can learn how to do so by visiting our protected data access page.", "snapshot_id": "s09", "url": "https://gtexportal.org/home/downloads/adult-gtex/overview" }, { "excerpt": "GTEx data, visualizations, and tools can all be used with acknowledgement.", "snapshot_id": "s09", "url": "https://gtexportal.org/home/downloads/adult-gtex/overview" } ], "values": { "license_status": "unstated", "commercial_use": "unstated", "derivatives": "unstated", "redistribution": "conditional" }, "source": "rules" } ], "adopted": 0, "second_pass": { "reviewer": "model-second-pass", "reviewed_at": "2026-11-14", "overall": "agree", "agreed": true, "disagreement": null, "missed_restrictions": [], "routing": [] } }, "notes": { "en": "Part by part: the open access data files on the GTEx Portal are covered by the portal data license shown here. The raw sequence data files (DNA and RNA), the full donor metadata files and other protected access data are not open: they need an approved dbGaP application and are hosted in AnVIL. This record does not make the protected part freely available.", "zh": "分部分说明：GTEx 门户上的开放获取数据文件适用本卡所示的门户数据许可；原始测序数据文件（DNA 与 RNA）、完整的供体元数据文件等受控数据不是开放的，须经批准的 dbGaP 申请，托管在 AnVIL。本记录不使受控部分可自由取用。" } }, "license_status": "unstated", "hosting": "pending", "hosting_reason": { "en": "License unstated, judged by public rules and checked by a second-pass model. The license question stays open.", "zh": "许可证状态：unstated，按公开规则判定并经第二遍模型复核。许可问题仍未解决。" }, "signoff": null, "risk_flags": [ "real-patient-text" ], "provenance": { "source_description": null, "upstream": [] }, "known_issues": [], "usage_notes": [ { "kind": "disclaimer", "excerpt": "These data are produced with a reasonable standard of care, but the GTEx Project makes no warranties express or implied, including no warranty of merchantability or fitness for particular purpose, regarding the accuracy or completeness of the data.", "url": "https://gtexportal.org/home/license", "snapshot_id": "s05" } ], "preflight": { "status": "not-run" }, "access": { "mdexa_download": null, "external_urls": [ "https://gtexportal.org/", "https://gtexportal.org/home/license" ], "notes": null }, "citation": { "text": null, "references": [] }, "verification_level": "partially-verified", "last_verified": "2026-11-14", "changelog": [ { "date": "2026-11-14", "change": { "en": "Listed on 2026-11-14. Judged by public rules and checked a second time before listing.", "zh": "2026-11-14 上架。按公开规则判定，经二次核对后收录。" } } ], "practical": { "content_scope": { "entities": [ { "kind": "study (human tissue gene expression and regulation)", "count": null, "count_as_of": null, "statement": { "text": { "en": "The text describes the Adult Genotype-Tissue Expression (GTEx) project as a comprehensive public resource for the study of tissue-specific gene expression and regulation.", "zh": "文本将成人基因型-组织表达（GTEx）项目描述为用于研究组织特异性基因表达和调控的综合公共资源。" }, "evidence": [ { "location": "dataset-page", "excerpt": "The Adult Genotype-Tissue Expression (GTEx) project is a comprehensive public resource for the study of tissue-specific gene expression and regulation.", "url": "https://gtexportal.org/home/downloads/adult-gtex/overview", "snapshot_id": "s09", "char_start": 31, "verified_on": "2026-11-13", "observed": "page", "captured_by": "browser-agent" } ] } } ], "coverage": [ { "text": { "en": "Samples were collected from 54 non-diseased tissue sites across nearly 1000 individuals, primarily for molecular assays including WGS, WES, and RNA-Seq.", "zh": "样本采集自54个非疾病组织部位、覆盖近1000名个体，主要用于包括WGS、WES和RNA-Seq在内的分子检测。" }, "evidence": [ { "location": "dataset-page", "excerpt": "Samples were collected from 54 non-diseased tissue sites across nearly 1000 individuals, primarily for molecular assays including WGS, WES, and RNA-Seq.", "url": "https://gtexportal.org/home/downloads/adult-gtex/overview", "snapshot_id": "s09", "char_start": 183, "verified_on": "2026-11-13", "observed": "page", "captured_by": "browser-agent" } ] } ] }, "identifiers": { "schemes": [ { "name": "datasetId", "bioregistry_prefix": null, "applies_to": "GTEx dataset releases", "statement": { "text": { "en": "The dataset records in this metadata use a datasetId value, shown here as gtex_v11.", "zh": "该元数据中的数据集记录使用datasetId值，此处为gtex_v11。" }, "evidence": [ { "location": "api-doc", "excerpt": "\"datasetId\":\"gtex_v11\",\"dbSnpBuild\":155,\"dbgapId\":null,\"description\":\"The GTEx Analysis V11 release is the most complete analyzed dataset for Adult GTEx\",\"displayName\":\"GTEx Analysis v11\"", "url": "https://gtexportal.org/api/v2/metadata/dataset", "snapshot_id": "s03", "char_start": 1733, "verified_on": "2026-11-13", "observed": "page", "captured_by": "pipeline" } ] } }, { "name": "dbGaP accession number", "bioregistry_prefix": null, "applies_to": "GTEx data in the acknowledgement phrase", "statement": { "text": { "en": "The acknowledgement phrase given in the license includes the GTEx Portal on MM/DD/YY and/or dbGaP accession number phs000424.vN.pN on MM/DD/YYYY.", "zh": "许可中给出的致谢语句包含在MM/DD/YY从GTEx门户获得的数据和/或dbGaP登录号phs000424.vN.pN（日期MM/DD/YYYY）。" }, "evidence": [ { "location": "dataset-page", "excerpt": "The data used for the analyses described in this manuscript were obtained from: [insert, where appropriate] the GTEx Portal on MM/DD/YY and/or dbGaP accession number phs000424.vN.pN on MM/DD/YYYY.", "url": "https://gtexportal.org/home/downloads/adult-gtex/overview", "snapshot_id": "s09", "char_start": 1228, "verified_on": "2026-11-13", "observed": "page", "captured_by": "browser-agent" } ] } } ], "crosswalks": [ { "to": "dbGaP", "to_slug": null, "statement": { "text": { "en": "The gtex_v7 dataset record lists dbgapId phs000424.v7.p2.", "zh": "gtex_v7数据集记录列出dbgapId phs000424.v7.p2。" }, "evidence": [ { "location": "api-doc", "excerpt": "\"dbgapId\":\"phs000424.v7.p2\"", "url": "https://gtexportal.org/api/v2/metadata/dataset", "snapshot_id": "s03", "char_start": 41, "verified_on": "2026-11-13", "observed": "page", "captured_by": "pipeline" } ] } }, { "to": "GENCODE / genome build", "to_slug": null, "statement": { "text": { "en": "The gtex_v11 record lists gencodeVersion v47 and genomeBuild GRCh38/hg38.", "zh": "gtex_v11记录列出gencodeVersion v47和genomeBuild GRCh38/hg38。" }, "evidence": [ { "location": "api-doc", "excerpt": "\"gencodeVersion\":\"v47\",\"genomeBuild\":\"GRCh38/hg38\"", "url": "https://gtexportal.org/api/v2/metadata/dataset", "snapshot_id": "s03", "char_start": 1966, "verified_on": "2026-11-13", "observed": "page", "captured_by": "pipeline" } ] } } ], "mismatch_cases": [] }, "access_methods": [ { "method": "web-api", "url": "https://gtexportal.org/api/v2/metadata/dataset", "formats": [ "JSON" ], "limits": [], "terms": { "same_as_card_license": true, "own_terms": null }, "reachable": { "status": 200, "checked_on": "2026-11-14" } }, { "method": "bulk-download", "url": "https://gtexportal.org/home/downloads/adult-gtex/overview", "formats": [], "limits": [ { "text": { "en": "The page notes that downloading GTEx protected access data from Terra will incur egress fees from Google.", "zh": "该页面指出，从Terra下载GTEx受保护访问数据将产生Google的出口流量费用。" }, "evidence": [ { "location": "dataset-page", "excerpt": "Downloading Protected Access Data: Please note that downloading GTEx protected access data from Terra will incur egress fees from Google.", "url": "https://gtexportal.org/home/protectedDataAccess", "snapshot_id": "s10", "char_start": 1008, "verified_on": "2026-11-13", "observed": "page", "captured_by": "browser-agent" } ] } ], "terms": { "same_as_card_license": true, "own_terms": null }, "reachable": { "status": 200, "checked_on": "2026-11-14" } } ], "versioning": { "latest": null, "update_cycle": { "cycle": "not-stated", "statement": null }, "breaking_changes": [ { "version": "gtex_v7", "date": null, "kind": "format", "statement": { "text": { "en": "The gtex_v7 release description states that expression quantification units were updated from RPKM to TPM.", "zh": "gtex_v7版本说明指出，表达定量单位已从RPKM更新为TPM。" }, "evidence": [ { "location": "api-doc", "excerpt": "GTEx v7 release. Expression quantification units updated from RPKM to TPM.", "url": "https://gtexportal.org/api/v2/metadata/dataset", "snapshot_id": "s03", "char_start": 84, "verified_on": "2026-11-13", "observed": "page", "captured_by": "pipeline" } ] } }, { "version": "gtex_v8", "date": null, "kind": "identifier", "statement": { "text": { "en": "The gtex_v8 description states that the tissue site detail \"Cells - Transformed fibroblasts\" was updated to \"Cells - Cultured fibroblasts\" in this release.", "zh": "gtex_v8说明指出，本版本中组织部位详情“Cells - Transformed fibroblasts”已更新为“Cells - Cultured fibroblasts”。" }, "evidence": [ { "location": "api-doc", "excerpt": "Tissue site detail \\\"Cells - Transformed fibroblasts\\\" has been updated to \\\"Cells - Cultured fibroblasts\\\" in this release.", "url": "https://gtexportal.org/api/v2/metadata/dataset", "snapshot_id": "s03", "char_start": 514, "verified_on": "2026-11-13", "observed": "page", "captured_by": "pipeline" } ] } }, { "version": "v19", "date": null, "kind": "other", "statement": { "text": { "en": "Genome build and annotation changed across releases: v7 GRCh37/hg19 with GENCODE v19; v8 GRCh38 with v26; V10 v39; V11 v47.", "zh": "各版本基因组与注释版本不同：v7 为 GRCh37/hg19、GENCODE v19；v8 为 GRCh38、v26；V10 为 v39；V11 为 v47。" }, "evidence": [ { "location": "dataset-page", "excerpt": "\"gencodeVersion\":\"v19\",\"genomeBuild\":\"GRCh37/hg19\"", "url": "https://gtexportal.org/api/v2/metadata/dataset", "snapshot_id": "s06", "char_start": 238, "verified_on": "2026-11-14", "observed": "page", "source_work": { "title": "GTEx Portal API v2 /metadata/dataset", "authors_or_org": "GTEx Consortium / GTEx Portal (Broad Institute)", "date": null, "date_as_written": null, "source_type": "official-page", "open_access": true, "doi_or_url": "https://gtexportal.org/api/v2/metadata/dataset" } } ] } } ], "history_url": null, "notes": [ { "text": { "en": "The portal's dataset metadata lists GTEx Analysis V11 (GRCh38, GENCODE v47, 946 subjects, 19,788 RNA-seq samples) as the most complete adult GTEx release.", "zh": "门户数据集元数据显示 GTEx Analysis V11（GRCh38、GENCODE v47、946 名供体、19,788 个 RNA-seq 样本）为最完整的成人 GTEx 版本。" }, "evidence": [ { "location": "dataset-page", "excerpt": "The GTEx Analysis V11 release is the most complete analyzed dataset for Adult GTEx", "url": "https://gtexportal.org/api/v2/metadata/dataset", "snapshot_id": "s06", "char_start": 1803, "verified_on": "2026-11-14", "observed": "page", "source_work": { "title": "GTEx Portal API v2 /metadata/dataset", "authors_or_org": "GTEx Consortium / GTEx Portal (Broad Institute)", "date": null, "date_as_written": null, "source_type": "official-page", "open_access": true, "doi_or_url": "https://gtexportal.org/api/v2/metadata/dataset" } } ] }, { "text": { "en": "V10 added a new data type, small RNA-seq.", "zh": "V10 新增了 small RNA-seq 数据类型。" }, "evidence": [ { "location": "dataset-page", "excerpt": "It includes a new data type, smallRNA-seq.", "url": "https://gtexportal.org/api/v2/metadata/dataset", "snapshot_id": "s06", "char_start": 1425, "verified_on": "2026-11-14", "observed": "page", "source_work": { "title": "GTEx Portal API v2 /metadata/dataset", "authors_or_org": "GTEx Consortium / GTEx Portal (Broad Institute)", "date": null, "date_as_written": null, "source_type": "official-page", "open_access": true, "doi_or_url": "https://gtexportal.org/api/v2/metadata/dataset" } } ] } ] }, "known_defects": [], "fit": { "suited_for": [ { "text": { "en": "The text describes the project as a comprehensive public resource for the study of tissue-specific gene expression and regulation.", "zh": "文本将该公共资源描述为用于研究组织特异性基因表达和调控。" }, "evidence": [ { "location": "dataset-page", "excerpt": "The Adult Genotype-Tissue Expression (GTEx) project is a comprehensive public resource for the study of tissue-specific gene expression and regulation.", "url": "https://gtexportal.org/home/downloads/adult-gtex/overview", "snapshot_id": "s09", "char_start": 31, "verified_on": "2026-11-13", "observed": "page", "captured_by": "browser-agent" } ] }, { "text": { "en": "The page states that GTEx data, visualizations, and tools can all be used with acknowledgement.", "zh": "该页面说明GTEx数据、可视化和工具均可在致谢的前提下使用。" }, "evidence": [ { "location": "dataset-page", "excerpt": "GTEx data, visualizations, and tools can all be used with acknowledgement.", "url": "https://gtexportal.org/home/downloads/adult-gtex/overview", "snapshot_id": "s09", "char_start": 1107, "verified_on": "2026-11-13", "observed": "page", "captured_by": "browser-agent" } ] } ], "not_suited_for": [] }, "commercial_access": { "route": "unknown", "url": null, "statement": null }, "completeness": { "core_complete": false, "literature_defects": 0, "reachable_access": 2, "meets_practical_bar": false, "gaps": [ { "field": "versioning.latest", "note": "未找到有出处的说明 / no sourced statement found" }, { "field": "versioning.update_cycle", "note": "未找到有出处的说明 / no sourced statement found" }, { "field": "known_defects", "note": "未找到有出处的说明 / no sourced statement found" }, { "field": "fit.not_suited_for", "note": "未找到有出处的说明 / no sourced statement found" }, { "field": "commercial_access", "note": "未找到有出处的说明 / no sourced statement found" } ] } }, "access_recipe": { "verified_on": "2026-11-14", "latest_release": null, "files": [], "api": [], "registration": null, "bulk_download": [], "gaps": [ "no direct file address was found on the official pages we hold", "no latest release/version stated on the pages we hold", "the official pages we hold publish no checksum for the files; none was computed (we do not download data files)" ], "license_note": { "license_status": "unstated", "text": "Use according to the terms of the official source; this recipe does not say the data can be used freely." } }, "_links": { "text": "Continue in this database. This record is one of 109 processed and verified records (datasets, data resources and open models). To find others, call `https://mcp.mdexa.com/v1/datasets?q=` or connect the MCP server at `https://mcp.mdexa.com/mcp`; no key is needed for 20 calls per minute. Rows are under 1 KB; an empty result means \"not listed\". For a list of items, one batch check (free account) returns a report. Guide: /agents.md. Similar records: AlphaFold Protein Structure Database (https://mdexa.com/datasets/alphafold-db/); GEO (https://mdexa.com/datasets/geo/); gnomAD (https://mdexa.com/datasets/gnomad/).", "records": 109, "search": { "template": "https://mcp.mdexa.com/v1/datasets?q={words}", "example": "https://mcp.mdexa.com/v1/datasets?q=binding%20affinity" }, "mcp": "https://mcp.mdexa.com/mcp", "anonymous_calls_per_minute": 20, "guide": "https://mdexa.com/agents.md", "faq": "https://mdexa.com/developers/faq/", "similar": [ { "name": "AlphaFold Protein Structure Database", "url": "https://mdexa.com/datasets/alphafold-db/", "json": "https://mdexa.com/datasets/alphafold-db.json" }, { "name": "GEO", "url": "https://mdexa.com/datasets/geo/", "json": "https://mdexa.com/datasets/geo.json" }, { "name": "gnomAD", "url": "https://mdexa.com/datasets/gnomad/", "json": "https://mdexa.com/datasets/gnomad.json" } ] } }