{
  "schema_version": "2.0",
  "record_type": "dataset",
  "tier": "verified",
  "slug": "herb",
  "name": "HERB（中药高通量实验与文献数据库）",
  "summary": {
    "zh": "许可证声明：无法核实（NOASSERTION）；本站处理：待确认，暂只链接原出处。许可证无法核实：数据库条款页未能打开，未找到数据许可；确认前只链接原出处。",
    "en": "License: unverifiable (NOASSERTION); Mdexa hosting: pending. License unverifiable: Database terms page could not be opened; no data license found; link only until resolved."
  },
  "systems": [
    "traditional-medicine",
    "modern-medicine"
  ],
  "domains": [
    "tcm-materia-medica",
    "genomics-omics",
    "pharmacy-drugs"
  ],
  "content_types": [
    "database"
  ],
  "content_description": {
    "en": "Herb-ingredient-target-disease database",
    "zh": "中药-成分-靶点-疾病数据库"
  },
  "languages": [
    "zh"
  ],
  "modalities": [
    "tabular"
  ],
  "size": {
    "raw": "7,263种中药、49,258个成分、12,933个靶点、28,212个疾病；1,037项高通量实验（v1）；v2 为2,231项实验",
    "measures": [
      {
        "value": 7263,
        "unit": "items",
        "qualifier": "exact",
        "scope": "herbs"
      },
      {
        "value": 49258,
        "unit": "items",
        "qualifier": "exact",
        "scope": "ingredients"
      },
      {
        "value": 12933,
        "unit": "items",
        "qualifier": "exact",
        "scope": "targets"
      },
      {
        "value": 28212,
        "unit": "items",
        "qualifier": "exact",
        "scope": "diseases"
      },
      {
        "value": 1037,
        "unit": "items",
        "qualifier": "exact",
        "scope": "high-throughput experiments (v1)"
      },
      {
        "value": 2231,
        "unit": "items",
        "qualifier": "exact",
        "scope": "high-throughput experiments (v2)"
      }
    ]
  },
  "publisher": "北京中医药大学（Fang 等，NAR 2021；HERB 2.0 于 NAR 2025）",
  "year": {
    "value": 2020,
    "raw": "2020（v2：2025）"
  },
  "expert_review": {
    "en": "Literature entries manually curated",
    "zh": "文献条目人工整理"
  },
  "license": {
    "legacy_status": "pending",
    "spdx": "NOASSERTION",
    "commercial_use": "unstated",
    "derivatives": "unstated",
    "redistribution": "unstated",
    "rationale": {
      "en": "Database terms page could not be opened; no data license found",
      "zh": "数据库条款页未能打开，未找到数据许可"
    },
    "evidence": [
      {
        "location": "paper",
        "location_detail": {
          "en": "Paper CC BY-NC 4.0; NAR page says commercial reuse requires contacting the publisher",
          "zh": "论文 CC BY-NC 4.0；NAR 论文页提示商业再利用须联系出版方"
        },
        "excerpt": "Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License ( http://creativecommons.org/licenses/by-nc/4.0/ ), which permits non-commercial re-use, distribution, and reproduction",
        "spdx": "CC-BY-NC-4.0",
        "url": "https://pmc.ncbi.nlm.nih.gov/articles/PMC7779036",
        "verified_on": "2026-11-12",
        "snapshot_id": "s01",
        "observed": "page",
        "secondhand": false
      },
      {
        "location": "dataset-page",
        "location_detail": {
          "en": "Database page says free access, no registration; no data license; herb.ac.cn terms could not be opened [Note: No URL recorded, so no snapshot exists]",
          "zh": "数据库页称免费访问、无需注册，未单独声明数据许可；herb.ac.cn 使用条款未能打开［备注：未记录网址，无快照］"
        },
        "excerpt": null,
        "spdx": null,
        "url": null,
        "verified_on": null,
        "snapshot_id": null,
        "observed": "not-opened",
        "secondhand": true
      },
      {
        "location": "secondary-source",
        "location_detail": {
          "en": "NGDC page lists the database as Accessible without a license [Note: No URL recorded, so no snapshot exists]",
          "zh": "NGDC 页面该库为 Accessible，未给出许可［备注：未记录网址，无快照］"
        },
        "excerpt": null,
        "spdx": null,
        "url": null,
        "verified_on": null,
        "snapshot_id": null,
        "observed": "secondary-source",
        "secondhand": true
      }
    ]
  },
  "license_status": "unverifiable",
  "hosting": "pending",
  "hosting_reason": {
    "zh": "许可证无法核实：数据库条款页未能打开，未找到数据许可；确认前只链接原出处。",
    "en": "License unverifiable: Database terms page could not be opened; no data license found; link only until resolved."
  },
  "signoff": null,
  "risk_flags": [],
  "provenance": {
    "source_description": {
      "en": "Manual curation of literature and re-analysis of high-throughput experiments",
      "zh": "文献人工整理与高通量实验再分析"
    },
    "upstream": []
  },
  "known_issues": [
    {
      "en": "The NAR paper page notes commercial reuse requires contacting the publisher",
      "zh": "NAR 论文页提示商业再利用须联系出版方"
    },
    {
      "en": "The database's own terms (herb.ac.cn) could not be opened this time",
      "zh": "数据库自身使用条款（herb.ac.cn）本次未能打开"
    },
    {
      "en": "The NGDC page lists the database as Accessible without a license",
      "zh": "NGDC 页面该库为 Accessible，未给出许可"
    }
  ],
  "preflight": {
    "status": "not-run"
  },
  "access": {
    "mdexa_download": null,
    "external_urls": [
      "https://pmc.ncbi.nlm.nih.gov/articles/PMC7779036"
    ],
    "notes": null
  },
  "citation": {
    "text": null,
    "bibtex": null,
    "references": []
  },
  "verification_level": "partially-verified",
  "last_verified": "2026-11-12",
  "tags": [
    {
      "facet": "source_type",
      "value": "literature",
      "basis": "inferred",
      "inferred_from": "card-source",
      "note": {
        "en": "Card: curated from literature and experiments.",
        "zh": "卡片称数据整理自文献与高通量实验"
      }
    },
    {
      "facet": "specialty",
      "value": "tcm-materia-formulas",
      "basis": "inferred",
      "inferred_from": "card-content-description",
      "note": {
        "zh": "中药-成分-靶点数据库",
        "en": "Herb-ingredient-target database"
      }
    }
  ],
  "changelog": [
    {
      "date": "2026-11-12",
      "change": {
        "en": "Card converted from an earlier manual catalog; no new facts added; reclassified under taxonomy v2.",
        "zh": "由早期人工整理的目录转换生成，未新增事实；按分类体系 v2 重新归类。"
      }
    },
    {
      "date": "2026-11-12",
      "change": {
        "en": "License status split into license_status (what the license says) and hosting (what Mdexa does); the earlier conclusion is kept for traceability.",
        "zh": "把许可证状态拆成 license_status（许可证怎么写）与 hosting（本站怎么处理）；原结论保留以便追溯。"
      }
    },
    {
      "date": "2026-11-12",
      "change": {
        "en": "Added verbatim license excerpts and snapshot ids from captured page snapshots; no conclusion changed.",
        "zh": "补入来自已抓取页面快照的许可证逐字摘录与快照编号；未改动任何结论。"
      }
    },
    {
      "date": "2026-11-13",
      "change": {
        "en": "Added dataset-level tags: 1 (0 stated by the authors with excerpts, 1 inferred from the content). No conclusion changed.",
        "zh": "新增数据集标签 1 个（作者声明 0 个，附逐字摘录；据内容推断 1 个）；未改动任何结论。"
      }
    },
    {
      "date": "2026-11-13",
      "change": {
        "en": "Added specialty tags: tcm-materia-formulas(inferred).",
        "zh": "新增专科标签：tcm-materia-formulas(inferred)。"
      }
    }
  ],
  "_links": {
    "text": "Continue in this database. This record is one of 109 processed and verified records (datasets, data resources and open models). To find others, call `https://mcp.mdexa.com/v1/datasets?q=<words>` or connect the MCP server at `https://mcp.mdexa.com/mcp`; no key is needed for 20 calls per minute. Rows are under 1 KB; an empty result means \"not listed\". For a list of items, one batch check (free account) returns a report. Guide: /agents.md. Similar records: 中医药多维知识图谱（TCM-MKG） (https://mdexa.com/datasets/tcm-mkg/); ClinPGx/PharmGKB (https://mdexa.com/datasets/pharmgkb/); 医学考试题库 JSON 数据集 (https://mdexa.com/datasets/medical-exam-question-bank-json/).",
    "records": 109,
    "search": {
      "template": "https://mcp.mdexa.com/v1/datasets?q={words}",
      "example": "https://mcp.mdexa.com/v1/datasets?q=binding%20affinity"
    },
    "mcp": "https://mcp.mdexa.com/mcp",
    "anonymous_calls_per_minute": 20,
    "guide": "https://mdexa.com/agents.md",
    "faq": "https://mdexa.com/developers/faq/",
    "similar": [
      {
        "name": "中医药多维知识图谱（TCM-MKG）",
        "url": "https://mdexa.com/datasets/tcm-mkg/",
        "json": "https://mdexa.com/datasets/tcm-mkg.json"
      },
      {
        "name": "ClinPGx/PharmGKB",
        "url": "https://mdexa.com/datasets/pharmgkb/",
        "json": "https://mdexa.com/datasets/pharmgkb.json"
      },
      {
        "name": "医学考试题库 JSON 数据集",
        "url": "https://mdexa.com/datasets/medical-exam-question-bank-json/",
        "json": "https://mdexa.com/datasets/medical-exam-question-bank-json.json"
      }
    ]
  }
}